PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000354.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 640aa    MW: 70330.6 Da    PI: 6.7545
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000354.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.6e-094524842254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              ++yp+ +++  LAk++gL+ +qV++WF N R +
  Itr_sc000354.1_g00001.1 452 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 484
                              89*****************************98 PP
2BELL881e-28300382372
                     BELL   3 qelqkkkakLlsllee.............VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               e+++kk++L+s+l+e             V++rYkqy++qlq+v++sFe vagl++a+p+++lAlka+S+hFrcLkdai+eq+
  Itr_sc000354.1_g00001.1 300 GEHRRKKSRLISMLDElirldcsltinfqVYRRYKQYYQQLQAVVASFESVAGLNNAAPFANLALKAMSKHFRCLKDAITEQL 382
                              5889999999999996555555555555589**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-48236380IPR006563POX domain
PfamPF075269.4E-38241379IPR006563POX domain
PROSITE profilePS5007111.953425488IPR001356Homeobox domain
SMARTSM003891.1E-9428492IPR001356Homeobox domain
CDDcd000863.49E-12428489No hitNo description
SuperFamilySSF466897.7E-17430495IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-27431492IPR009057Homeodomain-like
PfamPF059202.1E-18445484IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VLVQSHPECV DTNNNLHGCA GLAPLYDPPV IPSDLLTCAT  60
LHHHPLLSDH HKHTGKGASL MMGGSNTNTP TNFSTPTLYM DPQSSVPLHL NQEITRNPFL  120
YASPPQSLRF HDNSFHGGGG GEVTVVYKPE PLSVAHETTN INNVRGQGLS LTLSSHHTHQ  180
HQSASSLPLE LNLQRYDASM TSGLLVSSIH GGDSNCSTYN HDGDLSRSCS VPGPFTGYAS  240
ILKGSRFLKP AQQLLEEVCD VVRGVYAEKL EADSALMDPS METLSGSSLV DDSPNCNDGG  300
EHRRKKSRLI SMLDELIRLD CSLTINFQVY RRYKQYYQQL QAVVASFESV AGLNNAAPFA  360
NLALKAMSKH FRCLKDAITE QLQFTGKSQG HMSYEGEASP SAENLGKGLY FQSTAIRNAG  420
IMEHQPVWRP QRGLPERAVT VLRAWLFDHF LHPYPTDTDK LMLAKQTGLS RNQVSNWFIN  480
ARVRLWKPMV EEIHNLETRQ AQKNSQPKEQ NNNNPSEHLS MRNSVACEDA SASMHQIQEL  540
PTKRTRNEAE NSMGSDEAMD LSYGNLSHHT RLGIGAAAAA GGSSSVSLTL GLHQNNELGL  600
SDSFPVNAAQ RFGLDASSEG FVLSGFEPQN TQFGRDIIGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16434492563Homeobox protein Meis2
4xrm_B9e-16434492563Homeobox protein Meis2
4xrs_A9e-16434491158Homeobox protein Meis1
4xrs_B9e-16434491158Homeobox protein Meis1
5bng_A9e-16434492159Homeobox protein Meis2
5bng_B9e-16434492159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162875.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLF6HL250.0F6HL25_VITVI; Uncharacterized protein
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.18e-76TALE family protein