PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000354.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 185aa    MW: 20277.5 Da    PI: 5.0873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000354.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-052951123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + Fs+   L  H++ H
  Itr_sc000354.1_g00017.1 29 YRCTFCQRGFSNAQALGGHMNIH 51
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-42755IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.23E-62755No hitNo description
SMARTSM003550.00472951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4272956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEIDPINVEK SEQLRWSISE ESLGRVRLYR CTFCQRGFSN AQALGGHMNI HRKDRAKLRE  60
FSGDNNLLSL SVSAHDSPSP QRVDSGDEQP PGSPPERPPE VGDDGHVPKE KGKANGREDL  120
LLLPLFVEIP SPANNGKESR SVQLSDDGSP SASPALDLEL RLGVEPQPHD SVLNIPPINQ  180
VISQH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162188.11e-108PREDICTED: zinc finger protein 6
TrEMBLA0A1S3YRA13e-34A0A1S3YRA1_TOBAC; probable transcriptional regulator RABBIT EARS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-18C2H2 family protein