PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000355.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 551aa    MW: 60008.6 Da    PI: 6.5237
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000355.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33212269260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  d++++ei+Y+g Hnh+k
  Itr_sc000355.1_g00010.1 212 DDGYNWRKYGQKQVKGSENPRSYYKCTHPNCPTKKKVERAL-DGQITEIVYKGAHNHPK 269
                              8****************************************.***************85 PP
2WRKY105.13.7e-33387445159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  Itr_sc000355.1_g00010.1 387 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCPVRKHVERASHDIRSVITTYEGKHNHD 445
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-29202270IPR003657WRKY domain
SuperFamilySSF1182909.68E-26206270IPR003657WRKY domain
PROSITE profilePS5081123.904206270IPR003657WRKY domain
SMARTSM007749.5E-37211269IPR003657WRKY domain
PfamPF031061.0E-25212268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37372447IPR003657WRKY domain
SuperFamilySSF1182903.27E-29379447IPR003657WRKY domain
PROSITE profilePS5081139.18382447IPR003657WRKY domain
SMARTSM007748.5E-39387446IPR003657WRKY domain
PfamPF031061.5E-25388445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MAASSGTIDA PTASSSFSFS TASSFMSSSF TDLLASDAYS GGSVSRGLGD RIAERTGSGV  60
PKFKSLPPPS LPLSSPAVSP SSYFAFPPGL SPSELLDSPV LLSSSNILPS PTTGTFPAQA  120
FNWKNDSNAS QEDVKQEEKG YPDFSFQTNS ASMRTLNYED SKRKDELNSL QSLPPVTTST  180
QMSSQNNGGS YSEYNNQCCP PSQTLREQRR SDDGYNWRKY GQKQVKGSEN PRSYYKCTHP  240
NCPTKKKVER ALDGQITEIV YKGAHNHPKP QSTRRSSSST ASSASTLAAQ SYNPPASDVP  300
DQSYWSNGNG QMDSVATPEN SSISVGDDEF EQSSQKREPV GDEFDEDEPD AKRWKVENES  360
EGVSAQGSRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSQGCPV  420
RKHVERASHD IRSVITTYEG KHNHDVPAAR GSGSHGLNRG ANPNNNAAMA MAIRPSTMSL  480
QSNYPIPIPS TRAMQPGEGQ APYEMLQGPG GFGYSGFGNP MNAYANQIQD NAFSRAKEEP  540
RDDLFLERLL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36203448878Probable WRKY transcription factor 4
2lex_A5e-36203448878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3235900.0KU323590.1 Ipomoea trifida WRKY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178621.10.0PREDICTED: probable WRKY transcription factor 26 isoform X1
SwissprotQ6IEQ71e-137WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A191T7X30.0A0A191T7X3_IPOTF; WRKY protein
STRINGEOY346310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-116WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]