PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000358.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 239aa MW: 27263.4 Da PI: 9.9568

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000358.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.2	4.6e-16	128	212	1	91
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v+ +l lp +f+++h +k ++ ++tl de+g + + k+ k++ l++GW++F+ +++L +gD +vF+l++ Itr_sc000358.1_g00019.1 128 FIKPMLQSHVTGGFWLGLPVQFCKAHL-PK-RDEMITLVDENGDESDTKYLALKTG----LSGGWRGFALDHELVDGDALVFQLIE 207 89********************995.33.5569***********666666....*********************998 PP SSEE. CS B3 87 rsefe 91 ++f+ Itr_sc000358.1_g00019.1 208 PTRFK 212 76664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.73E-22	122	216	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-18	123	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.66E-25	126	212	No hit	No description
Pfam	PF02362	2.8E-14	128	213	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-19	128	217	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.068	128	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MVMSKKVLAY EESRQKRLEE NKKRMEELNL NKLAQALRNS PKPSPMKKTK PRAKQPVELT 60 AVRRSSRVAD KPAPNYKEMG LETLRIGRRS YGRRDLLNRV YASDGNRLDA IQRAEDLEAG 120 LDNQFPSFIK PMLQSHVTGG FWLGLPVQFC KAHLPKRDEM ITLVDENGDE SDTKYLALKT 180 GLSGGWRGFA LDHELVDGDA LVFQLIEPTR FKAFMVNFTL NLLQVYIIRV NEAEEKGAE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157841.1	1e-155	PREDICTED: B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	8e-83	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A484MAT0	1e-123	A0A484MAT0_9ASTE; Uncharacterized protein
STRING	XP_009772546.1	1e-113	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-81	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]