PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000358.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 307aa    MW: 33162.9 Da    PI: 8.8776
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000358.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.11.1e-31205261158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy++Il+RR++Rak+e++kkl +k+rkpylheSRh+hAlrR+R++gGrF
  Itr_sc000358.1_g00020.1 205 QEPVYVNAKQYHGILRRRESRAKAESQKKL-IKARKPYLHESRHQHALRRARSTGGRF 261
                              69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35203264IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.172204264IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-26206261IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-23207229IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860209229IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-23238261IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQSKSGTVNR VEARSYNLPG SAVYADPWWT AAGCNPINPR SKRASVSDSS SLEQSVDDQS  60
QSDGDDDTAK KSQNSAPSDQ GDTGGYITSW ADGNYGQVDQ SLQHAKSIMS ARTDESLIQP  120
PQLELVGHSI ACAPNLYTDP YFMGMMASYG QPLILLKVQA LHFHIFQLFC GHLGNIGTYP  180
GKACVPPQFL DLQQARMPLP LEMTQEPVYV NAKQYHGILR RRESRAKAES QKKLIKARKP  240
YLHESRHQHA LRRARSTGGR FAKKSETAAS NETGSGAAAD PQLPSINGGS SYSVGGSSGG  300
RGSVSCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-18204261158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157839.11e-155PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_019157840.11e-155PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1J6I1Z64e-90A0A1J6I1Z6_NICAT; Nuclear transcription factor y subunit a-1
TrEMBLA0A1S3XRI46e-91A0A1S3XRI4_TOBAC; nuclear transcription factor Y subunit A-1-like
STRINGXP_009617196.12e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-49nuclear factor Y, subunit A1