PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000361.1_g00020.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 123aa MW: 14201.3 Da PI: 8.0557

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000361.1_g00020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.7	2.6e-40	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk lrr+C++dC++ pyfp ++p++f +vh++FGasnv k+l++++e+er d+++sl+yeA++r++dPvyG+vg+i+ l++q Itr_sc000361.1_g00020.1 8 RCAACKQLRRRCPSDCIFLPYFPPNDPQRFSYVHRIFGASNVAKMLQKVEEHERGDVAESLYYEAHCRIQDPVYGCVGIITILHEQ 93 6*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 + + + +l+++++e Itr_sc000361.1_g00020.1 94 IYEFQCQLVKVEAE 107 ******999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.802	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-40	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MSSSSNRRCA ACKQLRRRCP SDCIFLPYFP PNDPQRFSYV HRIFGASNVA KMLQKVEEHE 60 RGDVAESLYY EAHCRIQDPV YGCVGIITIL HEQIYEFQCQ LVKVEAEIQA VKARLGHLQP 120 QFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-36	1	108	4	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-36	1	108	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019184388.1	5e-78	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-46	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A328EE46	7e-61	A0A328EE46_9ASTE; Uncharacterized protein
TrEMBL	A0A484MRQ4	7e-61	A0A484MRQ4_9ASTE; Uncharacterized protein
STRING	XP_009589427.1	5e-60	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-49	LOB domain-containing protein 24