PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000364.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 119aa    MW: 13659.3 Da    PI: 4.7314
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000364.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-0833112345
                              SS-HHHHHHHHHHHHHTTTT......................................-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg......................................tWktIartmgkgRtlkqcksrwq 45 
                               ++++E+ l+ + +++ G +                                      +W++Ia +++ gRt++++  +w+
  Itr_sc000364.1_g00013.1  33 VFSEDEEILITRMFNLVGERtrscllthnlsprnqlnylcwhshiispkmfgcvddqtRWSLIAGRIP-GRTAEEIEKYWN 112
                              699***************99************************************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.8E-630117IPR001005SANT/Myb domain
PfamPF002491.7E-534113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-103451IPR009057Homeodomain-like
CDDcd001671.58E-491112No hitNo description
Gene3DG3DSA:1.10.10.604.3E-1091114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MADLDTNSST CGTEAQVDSI VEVTSKDLEK ELVFSEDEEI LITRMFNLVG ERTRSCLLTH  60
NLSPRNQLNY LCWHSHIISP KMFGCVDDQT RWSLIAGRIP GRTAEEIEKY WNSRYSTSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159059.14e-42PREDICTED: MYB-like transcription factor ETC1 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.11e-09MYB_related family protein