PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000365.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 252aa    MW: 28253.9 Da    PI: 4.5834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000365.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-135395754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                               Er+RR+++N++++ Lr ++Pk +      K++Ka+i + A+eYI++L
  Itr_sc000365.1_g00002.1 53 VSERNRRKKLNERLFALRAVVPKiS------KMDKASIIKDAIEYIQEL 95
                             57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1745110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2664695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.27E-1349100No hitNo description
Gene3DG3DSA:4.10.280.105.7E-1652111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENIGDEYKH YWETQTFLQS EELDSYFEEA ISAYYDSSSP DGSQSSAASK NIVSERNRRK  60
KLNERLFALR AVVPKISKMD KASIIKDAIE YIQELREQER IIQAEIWELE SSGKKSEFDE  120
EGISSNSKPK RTRLVDDLLP GAGAAGGYDN ESPPPGSRSP VDVLELRVSS MGKKTLVVSL  180
TCSKRTDTMI KLCEIFESLD IKIISANITA FSGRLLKTLF IEAEEEEKDL LKIRIETAIA  240
TLNDPDSPTM GI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197883.11e-154PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV97e-83BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3YB161e-123A0A1S3YB16_TOBAC; transcription factor bHLH35-like isoform X2
TrEMBLA0A1S3YC571e-123A0A1S3YC57_TOBAC; transcription factor bHLH35-like isoform X2
TrEMBLA0A1U7V7321e-123A0A1U7V732_NICSY; transcription factor bHLH35-like isoform X2
STRINGXP_009603227.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-76bHLH family protein