PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000368.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 132aa    MW: 15054.2 Da    PI: 10.7824
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000368.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13e-252271251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             rien+  r+vtfskRr+g++KKA+E+S+LC++e+a+++fs++gk +++s+
  Itr_sc000368.1_g00011.1 22 RIENDAHRNVTFSKRRTGLFKKASEMSTLCGTEIAMVVFSPSGKAFTFSN 71
                             9***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.9041373IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-261386IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-301372IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-211535IPR002100Transcription factor, MADS-box
PfamPF003193.2E-252269IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-213550IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-215071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSSSNNTSRR VTRGRQRIPL ARIENDAHRN VTFSKRRTGL FKKASEMSTL CGTEIAMVVF  60
SPSGKAFTFS NPDLNTVLTK YFVQNPTTEA NIHELIVRNH REANMRMKNA QINILEAQID  120
EEMLINQALE RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A8e-191497184Myocyte-specific enhancer factor 2A
3kov_B8e-191497184Myocyte-specific enhancer factor 2A
3kov_I8e-191497184Myocyte-specific enhancer factor 2A
3kov_J8e-191497184Myocyte-specific enhancer factor 2A
3p57_A8e-191497184Myocyte-specific enhancer factor 2A
3p57_B8e-191497184Myocyte-specific enhancer factor 2A
3p57_C8e-191497184Myocyte-specific enhancer factor 2A
3p57_D8e-191497184Myocyte-specific enhancer factor 2A
3p57_I8e-191497184Myocyte-specific enhancer factor 2A
3p57_J8e-191497184Myocyte-specific enhancer factor 2A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179195.16e-53PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A328DKU48e-45A0A328DKU4_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-28AGAMOUS-like 61