PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000368.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 342aa    MW: 38911.9 Da    PI: 7.461
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000368.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.8e-0985109126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykt+ C  f++ G C+ G+ C+FaHg
  Itr_sc000368.1_g00016.1  85 YKTRMCVKFME-GNCRNGEHCTFAHG 109
                              9**********.*************8 PP
2zf-CCCH25.52.2e-08146168325
                              S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                              +++C+ f+ + +C+yG+rC+F H
  Itr_sc000368.1_g00016.1 146 MKICKKFYNGEECPYGERCNFLH 168
                              579******66************ PP
3zf-CCCH40.25.7e-13226251126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt++C+ +  tG+C++G+rC+FaHg
  Itr_sc000368.1_g00016.1 226 WKTKICSKWEITGQCPFGERCHFAHG 251
                              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-1581117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-981115IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-484110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4584111IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-585109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385143171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0066143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7143170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-8145170IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-6146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-17221258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10224256IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-8225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356225253IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10226251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSFPDPPPPS QSFVSLPYSG GDMGGFWPPL QMNQEHIELY SQFDNEPPLK RSRNSEINPL  60
VSANAQNPKV NPPNLPGKGS NHIFYKTRMC VKFMEGNCRN GEHCTFAHGA EDLREPPPNW  120
QDIVREKDKD RGAGNWNNDQ KVIHRMKICK KFYNGEECPY GERCNFLHER SPQFKNDMAR  180
EQRESSAISI GTTGSMLGRR SESDQFEINQ HASVDSDAYR IKPTFWKTKI CSKWEITGQC  240
PFGERCHFAH GHSELKAPTG RTEMETTTNF APAPIKPLAP AVDPSPANAV PCVPVKEQQQ  300
QPEEGKKFLK WKPTKKICPI YADWIEDLVP PHLLCRKAED EF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191612.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
TrEMBLA0A484LL380.0A0A484LL38_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000655851e-144(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-72C3H family protein