PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000373.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 830aa    MW: 91093.5 Da    PI: 6.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000373.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.5e-15336382455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A+eY+ksLq
  Itr_sc000373.1_g00013.1 336 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIEYLKSLQ 382
                              6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-20330399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.885332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-16335386No hitNo description
Gene3DG3DSA:4.10.280.103.0E-20336390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-13336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MNHCVPDFDM DEDFNLPPTA TSSSGLTRHK KSTMAEEDIM ELLWQNGQVV VHSQNHRSLH  60
KSHFSGDAAI PAEQPVTKEI RPAGEETAAN QHVFMQEDEM ASWLHYPLEE PSFDRDLYAD  120
LLYPPASSSP VYAAPTTAAP PREIRPPVSE IRQLPMHQPP TPRPPIIPPA KRTDLEGAPR  180
VQNFGHFSRL PRARIEPGPS SSSQAAREST VVDSNETPMV KAESIVSRVA ESAAPISGGN  240
VGCGTVSGTV ATGTSTGNRE MMTCEQTMTS SPGGSGASAT AEPPQKPAPT ATDDRKRKGR  300
ETDDTEGHSE DIDLESADTK KQSRGSATKR SRAAEVHNLS ERRRRDRINE KMRALQELIP  360
RCNKSDKASM LDDAIEYLKS LQLQVQMMSM GCGMVPMMYP GIQQYMPAMG MNMSMGMCMD  420
MGMNRAMVPY PPILPGSSLP NATAAAQINP RFAMAPSFPM PPVPMPDPSR VQTSNQPDPM  480
LNPLITHNPN QQHIPNCADP YQQLFGLHQA QATLPQNQTV EHPINSKPSS SKDVGNPGNH  540
QSLKVEFTSS FLAIKHMSSS SCAFVNSLST SRFFTRYYLM LTSFLVFGHQ WVPEEMDSCH  600
SFEVSMVAYS NDLHLACFGF MNLLSISIMF SPLDILKSSN FFMAIKSGVV NDLEENVLGD  660
FVNVVFLPVC SDLFLSQLGN VSRSICSLSI TLNDGSRDSS TKYVGKMQVN GLFLWFSNIM  720
MGFVVLTSRS DEVVVSIRGA EPQRLTDPPG CDVPSVPXXX XXXXXXXXXX XXXHSPDCPM  780
LARKLQSAMR VSVSGLDSAS LFKAWTIAFE SVSTISLLNP RSIAIFKPSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188490.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1J6JNV30.0A0A1J6JNV3_NICAT; Transcription factor pif1
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-60phytochrome interacting factor 3-like 5