PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000387.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 181aa MW: 19319.6 Da PI: 9.0989

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000387.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	72.1	1.7e-22	62	121	95	154
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ e +++P+ev+ +a frcvr+ssv ++ +++aYq++v+i+G vfkGiLydqG+e+ Itr_sc000387.1_g00005.1 62 DTSRSEEERNFPAEVNLPAEFRCVRLSSVGNEADQFAYQSTVTIAGRVFKGILYDQGPES 121 2344555666************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.7E-22	49	120	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	9.1E-22	72	119	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MKKKKKEARW VGQATADAKT AETKRRKTVL SCGAELAVRA EGFSALLTSR ALGFPSLDVA 60 PDTSRSEEER NFPAEVNLPA EFRCVRLSSV GNEADQFAYQ STVTIAGRVF KGILYDQGPE 120 SRYDVTGESS SGGLQHHNLI TAAAAVAAGG ATTTAAASPH PYPSPFSTFM PGTHFFSYPK 180 S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169268.1	3e-68	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	6e-24	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1J6I112	1e-31	A0A1J6I112_NICAT; Protein shi related sequence 1
TrEMBL	A0A2N9GQE7	2e-31	A0A2N9GQE7_FAGSY; Uncharacterized protein
STRING	EOX90942	3e-29	(Theobroma cacao)
STRING	XP_009602229.1	3e-29	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-23	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]