PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000390.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 414aa    MW: 46166 Da    PI: 8.9692
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000390.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16.1e-26188242156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              kprl+Wtp+LH++Fv +v+q+ G  +A+Pk+il+lm+v+ L++e+v+SHLQkYRl+
  Itr_sc000390.1_g00008.1 188 KPRLVWTPQLHQQFVAVVNQI-GLRNAVPKKILDLMNVPRLSRENVASHLQKYRLH 242
                              79*******************.9*******************************97 PP
2Response_reg562.3e-19161241108
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+ + +++l+ +l   +y +v  ++ + +al++l+e +  +D++l  + m++++G++ll +i   + +lp++++++ ++ +
  Itr_sc000390.1_g00008.1  16 VLLVDDDATCLRILEALLLACNY-KVVKCRGAIDALRILQEGKeeIDIVLSELHMSRVNGFKLLDQIIGLQIDLPVVMMSSDEKVD 100
                              89*********************.***************999999**********************99999************** PP

                              HHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelv 108
                               +++ +  Ga ++l Kp+ +ee+ 
  Itr_sc000390.1_g00008.1 101 AIKQIVIQGACGYLLKPVRKEEIK 124
                              ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-2713135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-3013164No hitNo description
SMARTSM004481.3E-1714127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.3415131IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-1716124IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.39E-2017130No hitNo description
PROSITE profilePS5129410.826185244IPR017930Myb domain
SuperFamilySSF466891.97E-18186245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27187245IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-23188242IPR006447Myb domain, plants
PfamPF002495.7E-7191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MNKLFSNPLF PAGVRVLLVD DDATCLRILE ALLLACNYKV VKCRGAIDAL RILQEGKEEI  60
DIVLSELHMS RVNGFKLLDQ IIGLQIDLPV VMMSSDEKVD AIKQIVIQGA CGYLLKPVRK  120
EEIKVLWQHV VRHKQGNLGK GIRPPAAAAF WDSGEMPPQQ KSVENCGSSN NNRDEDINAT  180
ATTVNVKKPR LVWTPQLHQQ FVAVVNQIGL RNAVPKKILD LMNVPRLSRE NVASHLQKYR  240
LHLQRNGDQN SYKRLSIHQL HYEDMVLNKN NEQQVMPAGG DHHNYVNVYN YGSLGRGSNV  300
YHYGGLGRRV GGSNVYNYGS LGRRVGGSTT TMDNYGSLGR RVGGSTTTNY FSAFPPYQPQ  360
STGYTHNNNN PNQLGNTSSA PSQRQQDETQ TQYNDEGDFG VSLYDFSGTD SNYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-21188244157Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188286.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLA0A0R0I3I03e-71A0A0R0I3I0_SOYBN; Two-component response regulator
TrEMBLA0A445IWS24e-71A0A445IWS2_GLYSO; Two-component response regulator
TrEMBLI1L0U94e-71I1L0U9_SOYBN; Two-component response regulator
STRINGGLYMA09G04470.17e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.16e-62response regulator 1