PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000391.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 1187aa    MW: 131079 Da    PI: 6.7647
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000391.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.9e-22209310199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v
  Itr_sc000391.1_g00001.1 209 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSV 293
                              99*****************************9545444.38********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   ++++++l+++++r+
  Itr_sc000391.1_g00001.1 294 LFI--RDEKQQLLLGIRRA 310
                              ***..5688889****997 PP
2Auxin_resp117.31.3e-38335418183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aaha +++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr L+
  Itr_sc000391.1_g00001.1 335 AAHASANNSPFTVFYNPRASPSEFVIPLAKYYKAVYgNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRKLQ 418
                              799*********************************9********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-43199338IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-40202324IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-18208300No hitNo description
PfamPF023622.7E-20209310IPR003340B3 DNA binding domain
SMARTSM010194.2E-22209311IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97209311IPR003340B3 DNA binding domain
PfamPF065071.7E-33335418IPR010525Auxin response factor
PROSITE profilePS5174527.82110751159IPR000270PB1 domain
PfamPF023097.1E-710751160IPR033389AUX/IAA domain
SuperFamilySSF542771.47E-610881153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    Send to blast
MKTPPPPANS NPPEAEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS EQMDPTVDLA  60
GSTGFSRVYR VPKAGFLLQI QLLSIRILLS RIVFTSLIDA MMLVLEISGL LCHLAVQTKF  120
DCLFPNLVNK FAVLVAASMK KDVDAQIPNY PNLPSMLICY LHNVTLHADP ETDEVYAQMT  180
LQPVPSIDKE ALLRSDLSTK VNKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPALDY  240
SMQPPAQELV ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK  300
QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHASA NNSPFTVFYN PRASPSEFVI  360
PLAKYYKAVY GNQVSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK GSQWRKLQVG  420
WDESTAGERR SRVSIWEIEP VTAPFFLCPT PPFFRAKRPR QPGMPDDDGS DLDGFFKRTM  480
PWIGDDFGMK DPQALPGLSL AQWMNMQSNP SLTNTMQPNY LHSLSGSVLQ NLAGGDLTRQ  540
LGLPGQQIPQ QSNLQFNSQR PGQQVQQVDQ LQKMPPAAMN PLGSMLQPQQ QLTDVGQQPR  600
QNLVNQTMPT SQVQAQLLQA QGLVQPQNVL QQQQSIQNQL QRNLPQSLPP QPPQQQQQQQ  660
QILNQTQQPS FMPSHPSNPI TQQMHLPDNQ IQLQLLQKLQ QQQQQSLLAQ QSTLQQPSQL  720
SQLPDPQKHV LDASQSFSRS MSTSQVQDVS QSVSVSLPQS HMVMNNSQTN LRFSQPKLQQ  780
QQPMLAELPG TVGQTLAPTT NQLCATGSSL LTVGAGGGQS IITDDVPSCS TSPSTNNCPN  840
GVQAVVNGRV QRSTAIGDDI TQSSATLLSS SGLEAMSASS SLVKDIHQKA DVKNHLNNMS  900
KSHQNQGFLT PPVYHNGSAA QLDYLDSSSS ATSICLSQND VQLQPGTNPM SFSSQPMLFR  960
DITHDGEVQG DQRNNMPFAT NIDSQLGMPM MPDPLIPKNL VGSEKDFSNN LSSGGGMLSN  1020
YENPKEAQPE LSSSMVSQSF GVPDMGFNSI DSTINDGSFM NRSTWAPQPP IPRMRTYTKV  1080
YKRGAVGRSI DITRYSGYEE LKQDLARRFG IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD  1140
PWEEFVNCVR CIKILSPQEV QQMSLDGDFG NSVLHNQACS SSDGGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-14713543984388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174886.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_019174887.10.0PREDICTED: auxin response factor 19-like isoform X2
TrEMBLA0A2G9HCE80.0A0A2G9HCE8_9LAMI; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19