PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000399.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 241aa MW: 26216.8 Da PI: 4.5248

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000399.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.5	5.4e-09	207	230	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+ff + C+ G++C+F+H+ Itr_sc000399.1_g00002.1 207 KPPCKFFNTSKGCWNGSKCRFSHD 230 589********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.995	205	232	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0017	205	231	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	207	230	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-7	209	234	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-5	209	231	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MPDNWFIAAG EESVELGVQN QRQKGVAEEL YVHPYSIIPP NPSVGLDLED QSLDDRCIFH 60 VPQVELEEGE VLPPCEICAS SQPVSTSIHG NPIIPGYGGL KLDPELIADI VTVVRSAQID 120 LLDPDLLTMF LSNPQLVEQE MKVLLASSLL ATEEIPNPSM AERKPELIAL PHAGLPNMAA 180 GGNPLSQAQC SSSVPISKRE HESVGDKPPC KFFNTSKGCW NGSKCRFSHD VDAPYAKRRK 240 A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164612.1	2e-75	PREDICTED: zinc finger CCCH domain-containing protein 6-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5147	7	9