PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000399.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 255aa    MW: 27860.8 Da    PI: 5.3318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000399.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06221244326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               ++C++f  +  C+ G +C+F+H+
  Itr_sc000399.1_g00004.1 221 KPPCKYFNTSNGCWNGFKCRFSHD 244
                              589********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.746219246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6223248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4223245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRDDLFIAAG EESVELGLQN HREKGVPKQV YVHPYSIIPP NPSVGLDLED QSLDDRCIFH  60
VHLDPIEELE LEEGEVLPPC KICASSQPVS TSIHGNPIIP GYGGLKLDPE LIADIVTVVR  120
SAQIDLIDPD LLTMFLSNPQ LVEQEMKVLL TSLATEKIPK PNMAESKPEH IALPHAGMPN  180
MAAGGNPLSG AQCSSSMPIS KKEHLKNLVK SDGAHESVGD KPPCKYFNTS NGCWNGFKCR  240
FSHDVDAPYA KRRKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164612.13e-84PREDICTED: zinc finger CCCH domain-containing protein 6-like