PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000401.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 272aa    MW: 30476.6 Da    PI: 5.9327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000401.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-1375139354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkas.............kapskKlsKaeiLekAveYIksL 54 
                              ++h e+ErrRR+riNs ++ Lr+llP +s             +    K +Ka+ L k+ve +++L
  Itr_sc000401.1_g00016.1  75 KNHREAERRRRERINSHLDCLRTLLPCNSrvrilfffflflrGIEVAKTDKASLLAKVVERVREL 139
                              78*************************888************99****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.76772139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-1175139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1276148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1276166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1078145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQPENTPEIF DYYNNNNYYY CSSLAGNNGG GLPATYEIPP PSNHESFCSS GFYHTELPET  60
VSDSTPEARA LAASKNHREA ERRRRERINS HLDCLRTLLP CNSRVRILFF FFLFLRGIEV  120
AKTDKASLLA KVVERVRELK EEASELMEIE TGIPSESDEI TLLLSSDDEC AGDGRLVIKA  180
SLCCEDRLDL IPDLIHTLKS LRLSPLRAEM VTLGGRIRNV FILAGDLKDH ACADESILFL  240
RNALKSVVER SACGAGGERS KRRRMIDHGV IN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166442.11e-146PREDICTED: transcription factor bHLH106-like
SwissprotQ9LET01e-51BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A1S4AN703e-85A0A1S4AN70_TOBAC; transcription factor bHLH106-like
STRINGXP_009602423.15e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]