PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000401.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 468aa    MW: 51012.8 Da    PI: 7.9127
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000401.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.1e-10183223545
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                              k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Itr_sc000401.1_g00019.1 183 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 223
                              788*************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-8179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438181225IPR004827Basic-leucine zipper domain
CDDcd147082.55E-22183235No hitNo description
PfamPF001704.6E-7183223IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-7183226No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7184228No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141441.5E-32265340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGGSSTLKVG REGNKIVTAG MPSFISQTPV SNPMGTEGNT TQNPVISDYG VLEQYLGFRI  60
GDGANASRRP LLSSTSGTNS LMGTDVSGAL SKNLASLSTS LSAAATGSQA LQLQRGIQTN  120
QVPLSTHHEN WAESQMADSS SHTDTSTDMD ADDKNQGHEM GQSAGVLASD SSDKSKGKNV  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE NSRLKLTQLE QELQRARQQG IFISSSGDQS  240
HGAGTNGALA FDVEYGRWLE EQNRHINELR TAVNAHASDT DLRTITDNVK AHFDEIYRLK  300
GNAAKADVFH VLSGMWKTPA ERCFMWIGGF RPSELLKLLV NQLEPLTEQQ SEGIYSLQQS  360
SHEAEDALSQ GMDALQQSLA ETLAKGASGP EGSSGNVANY MGQMAMAMGK LGTLEGFLRQ  420
ADNLRQQTLQ QMHRILTTRQ SARSLLAIHD YFSRLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165966.10.0PREDICTED: transcription factor TGA2.2-like
RefseqXP_019165967.10.0PREDICTED: transcription factor TGA2.2-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1U8E8W60.0A0A1U8E8W6_CAPAN; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGXP_009759888.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-147TGACG motif-binding factor 6