PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000401.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 367aa    MW: 40522.2 Da    PI: 6.5178
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000401.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.81.6e-27126208271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              ++++Lr++++k   ++ek+e+ g++t+neva+eLv++                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wk
  Itr_sc000401.1_g00020.1 126 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVADfadpnntlaspdkqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 207
                              689********...*****999*******************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Itr_sc000401.1_g00020.1 208 G 208
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.7E-1223357IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-46121213IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.9E-35125208IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25127208IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-21128209IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.79E-37213323IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-37215359No hitNo description
SMARTSM011381.7E-51215359IPR014889Transcription factor DP, C-terminal
PfamPF087813.6E-34216328IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVNNQENGDK TPSKRGGGGA TRSCGTTISG QSVSTSSSVG SPTSRSEAAV LTPASEITFA  60
QLNNLDIHGD DARPQEAAGV DDHSEKHWHS DVRKQGHIGR NVLNDANTNA EEKKKRGQRA  120
SGGDKSGRGL RQFSMKVCEK VESKGRTTYN EVADELVADF ADPNNTLASP DKQQYDEKNI  180
RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSINDIEEL KSECLRLRNR IERKATYLEE  240
LEEQVVFISS HSNGLQNLMK RNERLYGSGN SPSAGVAFPF ILVQTRPHAT VEVEISEDMQ  300
LVHFDFNSTP FELHDDCYVL KAMKLCERPK RDDGGESSST PIVLQPQIPH PPVPSISGMP  360
PSSPLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-40119213193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165970.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-144DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U7ZXU41e-172A0A1U7ZXU4_NELNU; transcription factor-like protein DPB isoform X2
STRINGXP_010241817.11e-172(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-133Transcription factor DP