PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000403.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 254aa    MW: 28007.4 Da    PI: 8.0711
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000403.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.8e-41130206177
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              +Cqve C adl+ ak+yh+rhkvCevh+kap+vl++g+ qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk++
  Itr_sc000403.1_g00003.1 130 CCQVEMCGADLTFAKTYHKRHKVCEVHAKAPAVLLNGVDQRFCQQCSRFHEVSEFDEAKRSCRRRLAGHNERRRKAS 206
                              6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-33125192IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.137128205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-37130208IPR004333Transcription factor, SBP-box
PfamPF031101.4E-32131204IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLTNNNIGTV YKRYIYRQSG DSWVGCRVLV AVVVLTNFIS PLLSQHTSSR PIDHAFPSME  60
AHNHGGRLAS STTVKAKREL EGEDEDEEEE EDEEDECDLR KKKIMDVGLG KKGPSSGGVV  120
AGGGVTAASC CQVEMCGADL TFAKTYHKRH KVCEVHAKAP AVLLNGVDQR FCQQCSRFHE  180
VSEFDEAKRS CRRRLAGHNE RRRKASCENR GGGEGSSRRR VEPPLKESKQ CSRGGGQLII  240
SAAGTSSYEN FHIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-36124204484squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193671.11e-84PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A1B3IL646e-47A0A1B3IL64_POPTO; Squamosa promoter-binding protein 20
STRINGXP_010260271.12e-47(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.26e-39squamosa promoter binding protein-like 4