PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000412.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 305aa    MW: 32702.7 Da    PI: 6.4997
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000412.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-383490561
                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                             alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s
  Itr_sc000412.1_g00008.1 34 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 90
                             689***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-243484IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6743589IPR003851Zinc finger, Dof-type
PfamPF027013.3E-333589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQDIHSIGGG GGGRLFGGGG DRRLRPNQHH NLPALKCPRC DSLNTKFCYY NNYNLSQPRH  60
FCKSCRRYWT KGGVLRNVPV GGGCRKSKRS KPKSTASASA SASTPADASQ ECKSNSHSSS  120
ESSSLTGAGT ASAAAEVAST STATNIASNL VNYSDSAAFF IPPSSSPSFD QPLLDHSSND  180
HIFQDIGTFS NMITPSNEPS LLGFANMADI SPTFQIQQSQ PGQDAHWPQP EKIADQNFNP  240
PEITAAGFLD QTSQIDFPSL NQQQSRESNA SLPPLDWQPG GGGDQELFDL PGAVDQSYWN  300
QTQWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11119GGRLFGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152309.11e-167PREDICTED: dof zinc finger protein DOF5.4
TrEMBLF6GTE92e-82F6GTE9_VITVI; Uncharacterized protein
STRINGVIT_17s0000g04850.t013e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-31OBF binding protein 4