PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000415.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 243aa    MW: 27443.2 Da    PI: 9.6546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000415.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18139226194
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+  ++ps+v+   +l lp  f++++   ++++ t+tl desg +W   +  rk +    l++GWk+F+ +++L +gD +vF+l++
  Itr_sc000415.1_g00001.1 139 FVRSMLPSHVSGGFWLGLPSYFCRRNL--PARDETVTLIDESGAEWPTVYLARKAG----LSGGWKKFAVDHDLVDGDALVFQLIK 218
                              778899*****************9995..456779***************555555....*************************9 PP

                              SSEE..EE CS
                       B3  87 rsefelvv 94 
                              r  f+ ++
  Itr_sc000415.1_g00001.1 219 RAVFKIYI 226
                              88885554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-22131229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-25132230IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-28137228No hitNo description
PfamPF023626.1E-16139225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803139230IPR003340B3 DNA binding domain
SMARTSM010195.5E-24139230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVMSKVKYEE LRQQRVEENK RRLEELHLPL LSLALKNASP KPSPVYEEGE AARNQDRACP  60
GATIAPGRQI RRARVQRSIS YFSILIAVTY YERILPRSAS CPRRRDLSNR VYASDKDRAV  120
ATLKAEKLEA SLESNVPTFV RSMLPSHVSG GFWLGLPSYF CRRNLPARDE TVTLIDESGA  180
EWPTVYLARK AGLSGGWKKF AVDHDLVDGD ALVFQLIKRA VFKIYITRLN NSADDDGNET  240
SND
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174983.11e-124PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
TrEMBLA0A328DPU81e-108A0A328DPU8_9ASTE; Uncharacterized protein
STRINGXP_009783454.15e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-54B3 family protein