PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000415.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 232aa MW: 26003.6 Da PI: 10.0013

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000415.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.8e-21	90	149	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Itr_sc000415.1_g00022.1 90 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLakygKIEGKNVFYWFQNHKARERQ 149 7***************99************************************97 PP
2	Wus_type_Homeobox	119	2.1e-38	90	151	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq Itr_sc000415.1_g00022.1 90 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLAKYGKIEGKNVFYWFQNHKARERQKQ 151 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	28	No hit	No description
PROSITE profile	PS50071	10.187	85	150	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-11	87	154	IPR009057	Homeodomain-like
SMART	SM00389	5.2E-6	87	154	IPR001356	Homeobox domain
CDD	cd00086	3.12E-5	90	151	No hit	No description
Pfam	PF00046	3.5E-19	90	149	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-7	91	149	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MKVHQFGRSS GLMFDHDNNA APSLSLGCKR LRPLAPKLAA DGGAITISPP VFDLKSFIRP 60 ESNSPTKLGS PDTKKDSPQA AAVETHPGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ 120 ITAQLAKYGK IEGKNVFYWF QNHKARERQK QKRNTALLAA GLNHSPTTPP PTLPFDPSVV 180 VVGKEEESPK KRRCRSWAYE FLEMEEKRSS CCRREEGDRT LELFPLHPEL GR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174336.1	1e-147	PREDICTED: WUSCHEL-related homeobox 4-like isoform X2
Swissprot	Q6X7J9	4e-75	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1S4BIK0	1e-100	A0A1S4BIK0_TOBAC; WUSCHEL-related homeobox 4-like
TrEMBL	A0A1U7WHY0	1e-100	A0A1U7WHY0_NICSY; WUSCHEL-related homeobox 4
STRING	XP_009776871.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-72	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]