PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000415.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 361aa    MW: 38880.8 Da    PI: 10.1636
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000415.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.5e-31289346359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Itr_sc000415.1_g00031.1 289 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLTVTYEGEHNHS 346
                              99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-16236285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32276347IPR003657WRKY domain
PROSITE profilePS5081129.757282348IPR003657WRKY domain
SuperFamilySSF1182901.44E-26284347IPR003657WRKY domain
SMARTSM007745.6E-38287347IPR003657WRKY domain
PfamPF031068.3E-27289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAVELLSSYR NSGFAAKMEE NAVQEAAAAG LQSVEKLIRL LSQSQSQSSG FSSGSLPSPP  60
PATAAGEGSA DYQAVADVAV SKFKKFISLL DRTRTGHARF RRGPICNPPH VPQPQRKMDQ  120
ESEPMASGQT RLVENSEKPH TGASKMYSPP PIQRLPPLPH NHHHLLKNGP APDRKESSTT  180
INFSASQATS SPGSFISSLT GDTESLQPSL SSGFQITNLS QVSSAGRPPL STSSFKRKCN  240
SMDDSSLKCS SAGGSASGRC HCPKKRKSRV KRVVRIPAIS MKMADIPPDD FSWRKYGQKP  300
IKGSPHPRGY YKCSSVRGCP ARKHVERALD DPTMLTVTYE GEHNHSQSIG DTPASLILES  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20275345271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2803860.0GQ280386.1 Ipomoea batatas cultivar Tainong 57 WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175197.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX09e-99WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLC7ENF80.0C7ENF8_IPOBA; WRKY1
STRINGXP_009604893.11e-174(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-77WRKY DNA-binding protein 7