PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000417.1_g00023.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 987aa MW: 109273 Da PI: 7.2751

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000417.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+ dl++ k+yhrrhkvCevhska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Itr_sc000417.1_g00023.1 148 VCQVEDCQIDLTNSKDYHRRHKVCEVHSKATKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNSRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-32	141	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.77	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-37	147	227	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.0E-29	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	9.81E-7	759	873	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.60E-8	761	870	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.8E-6	761	871	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MESRIGGKGH HLYGPVIPDL KAVGKRSMEW DLNDWKWDGD MFSAVPLNCM PSDCRSRQLF 60 PDESQIPANN GVPNGSEEVV VLNEKGKKEM EKRRRLVVVE QEDLNECASL NLKLGGQVFP 120 ITEEEMEKGE RKNGKKTKVA GGSSNRAVCQ VEDCQIDLTN SKDYHRRHKV CEVHSKATKA 180 LVGNAMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNSRR RKTHPENVPN GAPMNDERGA 240 TNSSDQTKDQ DILSHLLRNL ASLAGSNDER NPSGPLPTSQ DLHNAGTSAG SPEKDSHQLV 300 GNSANLPTPE VLGKSMGAVN AEPGISQNPS TQPELIFPRK DCTTFKAIST DNLVRQTKLH 360 NIDLNNVYDD SQDCMGVLKS SDHCQNPGNI SSGCPLWVCQ DPHKSTSTRT SGNSASTSSF 420 SPSNSSGEAQ SRTDRIVFKL FGKDPSDFPI AMRKQIIDWL SNSPTEIESY IRPGCVILTI 480 YLRMDKSIWD ELCCDLSSSL RKLLDASSDS FWKTGWIYTR VQNRVAFVFN GQVVLDTPLP 540 VKGYNNCRIS SVKPIAVPVS KGAQFLVKGF DLSRSTARFL CALEGKYLVQ GNCGDMLEAD 600 SLVDQNDHNE IQSLSIPCSI PNVTGRGFIE VEDHGLSGSF FPFIVAEEEV CSEICTLESS 660 IDVAETASDS QQEPEKLEAR NRALDFIHDM GWLLHRSHLK FRLGSNSSCF PFDRFRWLIE 720 FSVDRDWCAV VKKLLDILFG GVVDAGEHSS LEMALQDIGL LHRAVRGNCR RMVEALLQYC 780 PDKGPDKSGE LVKTQHGGHY IFRPDAIVIG GLTPLHVVAS QKGLENLLDA LTNDPGQVGV 840 EAWKNARDST GLTPNDYACL RGHYSYIHLI QKKTNTKPPA NAHVVLDIPG KASDTTQKPK 900 AVDGNKSSFQ TEKQVATKPT TRSCRRCEQK LQYGTCSTSL AIYRPAMLSM VAIAAICVCV 960 ALLFKSSPEV LYVFQPFRWE LLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MESRIGGKGH HLYGPVIPDL KAVGKRSMEW DLNDWKWDGD MFSAVPLNCM PSDCRSRQLF  60
PDESQIPANN GVPNGSEEVV VLNEKGKKEM EKRRRLVVVE QEDLNECASL NLKLGGQVFP  120
ITEEEMEKGE RKNGKKTKVA GGSSNRAVCQ VEDCQIDLTN SKDYHRRHKV CEVHSKATKA  180
LVGNAMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNSRR RKTHPENVPN GAPMNDERGA  240
TNSSDQTKDQ DILSHLLRNL ASLAGSNDER NPSGPLPTSQ DLHNAGTSAG SPEKDSHQLV  300
GNSANLPTPE VLGKSMGAVN AEPGISQNPS TQPELIFPRK DCTTFKAIST DNLVRQTKLH  360
NIDLNNVYDD SQDCMGVLKS SDHCQNPGNI SSGCPLWVCQ DPHKSTSTRT SGNSASTSSF  420
SPSNSSGEAQ SRTDRIVFKL FGKDPSDFPI AMRKQIIDWL SNSPTEIESY IRPGCVILTI  480
YLRMDKSIWD ELCCDLSSSL RKLLDASSDS FWKTGWIYTR VQNRVAFVFN GQVVLDTPLP  540
VKGYNNCRIS SVKPIAVPVS KGAQFLVKGF DLSRSTARFL CALEGKYLVQ GNCGDMLEAD  600
SLVDQNDHNE IQSLSIPCSI PNVTGRGFIE VEDHGLSGSF FPFIVAEEEV CSEICTLESS  660
IDVAETASDS QQEPEKLEAR NRALDFIHDM GWLLHRSHLK FRLGSNSSCF PFDRFRWLIE  720
FSVDRDWCAV VKKLLDILFG GVVDAGEHSS LEMALQDIGL LHRAVRGNCR RMVEALLQYC  780
PDKGPDKSGE LVKTQHGGHY IFRPDAIVIG GLTPLHVVAS QKGLENLLDA LTNDPGQVGV  840
EAWKNARDST GLTPNDYACL RGHYSYIHLI QKKTNTKPPA NAHVVLDIPG KASDTTQKPK  900
AVDGNKSSFQ TEKQVATKPT TRSCRRCEQK LQYGTCSTSL AIYRPAMLSM VAIAAICVCV  960
ALLFKSSPEV LYVFQPFRWE LLKYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	140	222	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRL
2	217	222	SRRRKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180927.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
TrEMBL	A0A484KGE7	0.0	A0A484KGE7_9ASTE; Uncharacterized protein
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1