PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000418.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 175aa    MW: 18481.3 Da    PI: 9.6951
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000418.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.56e-382383262
                   zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             ++++lkcprC s+ntkfCyynny+lsqPryfCk+C+ryWtkGG lrn+PvGg++rk  k+s
  Itr_sc000418.1_g00008.1 23 EQEHLKCPRCGSMNTKFCYYNNYNLSQPRYFCKSCKRYWTKGGVLRNIPVGGASRKTTKRS 83
                             57899***************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.3E-332581IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.232781IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-202775IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNMQQEPPPL YPPPPPINPQ LPEQEHLKCP RCGSMNTKFC YYNNYNLSQP RYFCKSCKRY  60
WTKGGVLRNI PVGGASRKTT KRSSSSSSSS SDEKRSSTTS SSPSSTATKS SSSPPLPAAD  120
VNSHLALSIG GHSGGFLDGS GKHLGGFHDN PSRNSGSGSG SDCVDNGGRN GGQLA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572541e-34DQ857254.1 Glycine max Dof4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196356.15e-59PREDICTED: dof zinc finger protein DOF1.7
TrEMBLA0A0V0HDG73e-41A0A0V0HDG7_SOLCH; Putative dof zinc finger protein DOF3.1-like
STRINGXP_010033797.16e-40(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45610.14e-28Dof family protein