PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000423.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 181aa MW: 20536.4 Da PI: 6.3024

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000423.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Itr_sc000423.1_g00004.1 31 YECTFCKRGFTNAQALGGHMNIH 53 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.7E-5	29	57	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.17E-7	29	58	No hit	No description
PROSITE profile	PS50157	11.219	31	58	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0097	31	53	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MMSSSSDSCG EESEHGPEKF SDENAGVGRS YECTFCKRGF TNAQALGGHM NIHRKDKLKA 60 KQACNNQQKS AELSRKSKSN HEEVYAQISS QQQQQEQSFC SYSSSRAYVK YHQFFFPSSN 120 PSYQFQVLDH RGHYRNFALH GDADLSLRIG SPDDEEQERK EGMEVSEVDL ELRLGPNSAF 180 M

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180219.1	3e-98	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A1J6J0M8	5e-41	A0A1J6J0M8_NICAT; Transcriptional regulator tac1
STRING	XP_009613300.1	8e-41	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-15	C2H2 family protein