PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000434.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 253aa    MW: 28515.9 Da    PI: 7.961
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000434.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1552.8e-1762156287
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              fY +YA +vGF+v++s+ +k+ r+ge+ ++ +vCs++g++ ++k+           +   +r+r+++r+gC+ak+  k++ dg + 
  Itr_sc000434.1_g00009.1  62 FYIRYACTVGFEVCRSTDSKN-REGEVLRKYLVCSCQGFKPPTKEVclvgdgvgvaSILPKRRRVTNRVGCNAKIIFKLMGDGGYS 146
                              9****************9998.7888****************9999*******9987888999*********************** PP

                     FAR1  78 vtkleleHnH 87 
                              + +le+ H+H
  Itr_sc000434.1_g00009.1 147 MFSLEERHTH 156
                              ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1462156IPR004330FAR1 DNA binding domain
PfamPF105512.0E-11164226IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDFDSQAAFC GDEDAAIDSG GSSGCVMDIS PRKTKYLMPI YDETSKPFVG QRFCKLDDGV  60
GFYIRYACTV GFEVCRSTDS KNREGEVLRK YLVCSCQGFK PPTKEVCLVG DGVGVASILP  120
KRRRVTNRVG CNAKIIFKLM GDGGYSMFSL EERHTHWGMC IRVMQYNLVF VPFTGMNNHK  180
KSVTFAAGLI AKEDVESYVW LLDNFKRTMG HELTYIVTDQ DPSMRVVVPR RHSVHLCGPP  240
CACWDVFYYF FAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172923.14e-53PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-11FAR1 family protein