PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000438.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 480aa    MW: 52565.3 Da    PI: 6.7001
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000438.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.8e-32130187260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Itr_sc000438.1_g00005.1 130 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGQITEIVYKGSHDHPK 187
                              7****************************************.***************85 PP
2WRKY105.23.4e-33296354159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+v+g+++prsYY+Ct agC+v+k+ver+++dpk+v++tYeg+Hnh+
  Itr_sc000438.1_g00005.1 296 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCSVRKHVERASHDPKAVITTYEGKHNHD 354
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.515124188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-26126188IPR003657WRKY domain
SuperFamilySSF1182902.09E-24128188IPR003657WRKY domain
SMARTSM007749.1E-34129187IPR003657WRKY domain
PfamPF031064.4E-24130186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-37281356IPR003657WRKY domain
SuperFamilySSF1182904.58E-29288356IPR003657WRKY domain
PROSITE profilePS5081138.572291356IPR003657WRKY domain
SMARTSM007742.8E-38296355IPR003657WRKY domain
PfamPF031068.8E-26297354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MQGFGSTGGF SFPRSNIYIE SKSNNFEFEF PVGSYSTSES SSIGPKQNEP LKQAQDQCLP  60
QSLAPSSLLE SSIIPTSKEL RISAPVAVHT SSVSTAPIES DELNQRGQSN PGIQTLNGDQ  120
PAAGAERSSE DGYNWRKYGQ KLVKGSEFPR SYYKCTYPNC EVKKIFERSP DGQITEIVYK  180
GSHDHPKPQP SRRFTPGSLT SIQEDKFEKE SSFIVKEDKL NSNDFNGYPV LSPGRVDDDG  240
HEGAASQLLV TNDDTDDDDP FSKRRKLDGC VDITPVVKPI REPRVVVQTV SEVDILDDGY  300
RWRKYGQKVV RGNPNPRSYY KCTNAGCSVR KHVERASHDP KAVITTYEGK HNHDVPTART  360
SANHETGATP LSGASRVRPE ENDAISLDLG VGIGYGTEHR PNGQLHSLAP ETLQGQVHVS  420
SSGMMTVQPP PMVCYGTIHG GINRFGSTRQ NMVQAPGFDT LPLQPANQCP QTLGRVLLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37118356177Probable WRKY transcription factor 4
2lex_A4e-37118356177Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196883.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-131WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0P0UVU30.0A0A0P0UVU3_NICBE; Transcription factor
STRINGPGSC0003DMT4000766700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-128WRKY family protein