PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000439.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 506aa    MW: 56422.6 Da    PI: 7.6873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000439.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-11333378454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  ++e ++ L
  Itr_sc000439.1_g00012.1 333 HHMISERKRREKLNESFQHLRSLLPPG-----TKKDKASVLSITTEQLSAL 378
                              68899********************97.....7999999999999977766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.227329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-11331383No hitNo description
SuperFamilySSF474591.02E-14332396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8333378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-14333398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDSIFLLEEG DRIAFLFHRI MQSFGCTYIC LWSYLPHPSN YLVSVDGLFS GENSVARRLF  60
EEYRHSSPLL FHEGRIPGYA FKNNLPYLEL LFPALERLAS NEVQKQFYRE AGIKTAIFMG  120
CGAGEIELGL SSVPQANMEM EMKNIFPEDF FRQAAATALS LPVPVPAIGL PSPQLQPDPN  180
RPSSSSSSLR SLSIDSPESL LFGVAAATSY EPPLREVFSD QRGIMPPVTS PMSHIRGAAI  240
DFPSMQSEDA AITRAYLAVI SSSSSLHPQG SFQKPTAFRR YNMAAPAQPV GARAMIMKKQ  300
TVLKRSFEFF RNLSLMRRQE LVRTTRPTIT QVHHMISERK RREKLNESFQ HLRSLLPPGT  360
KKDKASVLSI TTEQLSALKA KVEELSRKNQ MLEAEVAKGA KAAAEEEEDG GGRVDVRITD  420
AGESTSEDNR VVDLRVTVRG ENGMLELVMR LLEFLKQVEN VRLISVEANT RSNSVNRIIL  480
RLVIQGGDLN ESDFLEAVRR VVGDLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342ERKRRE
2338343RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191634.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A1U8H7Q51e-151A0A1U8H7Q5_CAPAN; putative transcription factor bHLH041 isoform X1
STRINGXP_009793632.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-56bHLH family protein