PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000440.1_g00024.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 940aa MW: 104084 Da PI: 6.6906

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000440.1_g00024.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	6.6e-29	618	668	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAA+++gvc+T+LKriCRq+GI RWP+Rkik++ Itr_sc000440.1_g00024.1 618 EKTISLQVLRQYFAGSLKDAARSIGVCPTTLKRICRQHGITRWPSRKIKKV 668 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	607	688	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-24	620	668	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.68E-23	830	925	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-23	839	920	No hit	No description
SMART	SM00666	1.5E-28	840	923	IPR000270	PB1 domain
PROSITE profile	PS51745	25.219	840	923	IPR000270	PB1 domain
Pfam	PF00564	1.1E-18	840	921	IPR000270	PB1 domain
CDD	cd06407	1.65E-43	841	921	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MGDGSSAPNP NHIFGTGSSS HDNNTVDITL MDELLLDGFW LETTEGSNFW QPAAPFTSPS 60 NPLDSPSSYF PTTSHSNTTA QFTPNQFHNH FPQQTTQNST FLHMEELDAE YQTNNPDSVP 120 PSSSSPNQPP TFMLQGTEMN NKRLWIGPNR SNPTPTASVK KRLVQAIEYL KESTRDKDVL 180 IQIWVPVNSR GRHVLTTNNQ PFFLNPNCKS LADYRHVSRN YQFAADNNSK ELVGLPGRVF 240 LNKLPEWTPD VRFFRREEYP RVTHAKQYNV SGSLALPVFE RGSGTCLGVV EIVTTFQKAN 300 YSPELQDVCK ALEAVDLRSS GVSSPLDEQI CNQSYQATLE EIQDVLKCVC DTHKLPMAQT 360 WAPCIQQGKG GCRHSDENYT SCVSTIESAC YVRVPQVLEF HQACSEHHLL KGEGVAGGAF 420 MTNQPCFATD VTAFSKTEYP LSHHARIFGL CAAVAIRLRS IHTGSADFVL EFFLPPDCKG 480 DEEQKQMLHS LSSVIEQICR TLRVVTDQEL AVETPFPDQE RGSPSAGGLD KEKSKKLVSP 540 PPRDPSQEAS SWFTHMMDAQ SKGKSTSVSF SNNKDELEEN FNLTTNWEKT DVEDSGPKES 600 ANSSGDFSSG AKRRTKTEKT ISLQVLRQYF AGSLKDAARS IGVCPTTLKR ICRQHGITRW 660 PSRKIKKVGH SLRKLQLVID SVQGAEGAIQ LSSFYSSFPE LGSQSLQGTS NYSASKMNDQ 720 LQQVTTQPEG ILPLSPGTTC SKSTSSCSHS SSSSFNCSAR ANQSPFTLNS SAGGDASSAE 780 QSGEMLKRAR SDAELHGLGQ EDTKLLVRSH SQKIISSHSF QETLAPLSNS TSHTLQNACT 840 FRVKATFGEE KIRFSLQPHW RFGDLQHEIL ARFNIQDGSK FDIKYLDDDS EWVLLTCDAD 900 LEECIDIHRS SKSRTIKLSL HYANNLKHGS SSGSRGEYLM

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MGDGSSAPNP NHIFGTGSSS HDNNTVDITL MDELLLDGFW LETTEGSNFW QPAAPFTSPS  60
NPLDSPSSYF PTTSHSNTTA QFTPNQFHNH FPQQTTQNST FLHMEELDAE YQTNNPDSVP  120
PSSSSPNQPP TFMLQGTEMN NKRLWIGPNR SNPTPTASVK KRLVQAIEYL KESTRDKDVL  180
IQIWVPVNSR GRHVLTTNNQ PFFLNPNCKS LADYRHVSRN YQFAADNNSK ELVGLPGRVF  240
LNKLPEWTPD VRFFRREEYP RVTHAKQYNV SGSLALPVFE RGSGTCLGVV EIVTTFQKAN  300
YSPELQDVCK ALEAVDLRSS GVSSPLDEQI CNQSYQATLE EIQDVLKCVC DTHKLPMAQT  360
WAPCIQQGKG GCRHSDENYT SCVSTIESAC YVRVPQVLEF HQACSEHHLL KGEGVAGGAF  420
MTNQPCFATD VTAFSKTEYP LSHHARIFGL CAAVAIRLRS IHTGSADFVL EFFLPPDCKG  480
DEEQKQMLHS LSSVIEQICR TLRVVTDQEL AVETPFPDQE RGSPSAGGLD KEKSKKLVSP  540
PPRDPSQEAS SWFTHMMDAQ SKGKSTSVSF SNNKDELEEN FNLTTNWEKT DVEDSGPKES  600
ANSSGDFSSG AKRRTKTEKT ISLQVLRQYF AGSLKDAARS IGVCPTTLKR ICRQHGITRW  660
PSRKIKKVGH SLRKLQLVID SVQGAEGAIQ LSSFYSSFPE LGSQSLQGTS NYSASKMNDQ  720
LQQVTTQPEG ILPLSPGTTC SKSTSSCSHS SSSSFNCSAR ANQSPFTLNS SAGGDASSAE  780
QSGEMLKRAR SDAELHGLGQ EDTKLLVRSH SQKIISSHSF QETLAPLSNS TSHTLQNACT  840
FRVKATFGEE KIRFSLQPHW RFGDLQHEIL ARFNIQDGSK FDIKYLDDDS EWVLLTCDAD  900
LEECIDIHRS SKSRTIKLSL HYANNLKHGS SSGSRGEYLM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165237.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2G9HB62	0.0	A0A2G9HB62_9LAMI; Uncharacterized protein
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein