PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000446.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 333aa    MW: 36770.8 Da    PI: 6.5148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000446.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.8e-33166224159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK vk+s+fprsYYrCt++ C vkk+vers+edp++v++tYeg+H h+
  Itr_sc000446.1_g00011.1 166 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTPACGVKKRVERSSEDPSTVVTTYEGTHGHP 224
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-34151226IPR003657WRKY domain
SuperFamilySSF1182904.84E-29158226IPR003657WRKY domain
PROSITE profilePS5081131.766161226IPR003657WRKY domain
SMARTSM007749.2E-38166225IPR003657WRKY domain
PfamPF031063.7E-26167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MENKAAELSK TENNNNNNNP MVSPSFSDQI PATFSLQTLF DIPSSDHNKN PSSSFFDYLF  60
PSQDLSTTVF DLLQTPQPPL LIPPPPSQSL PESSEAVNTP VTPNSSSISS SSNEAAIDDQ  120
VPKTPAEEVE QESDRSKKQL KPKRKNQKRE REPRVAFMTK SEVDHLDDGY RWRKYGQKAV  180
KNSPFPRSYY RCTTPACGVK KRVERSSEDP STVVTTYEGT HGHPCPVTPR ATTVGIMPEP  240
SNFGSVSAAS GGTGSPPSSS FLIPHHHFHY PMQQQQPFFA ITSPLPPPLT YTPSTGNLER  300
RFPPSSSSPA ARDDGLLQDM LPFPLRKEPC PEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-281592261077Probable WRKY transcription factor 4
2lex_A5e-281592261077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180129.10.0PREDICTED: probable WRKY transcription factor 48 isoform X1
SwissprotO229002e-56WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A385NHK05e-82A0A385NHK0_CAMSI; WRKY transcription factor
STRINGXP_010259241.11e-80(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.18e-45WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]