PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000449.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 111aa MW: 12196.5 Da PI: 4.4003

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000449.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.2e-13	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yGdrC+F+H++ Itr_sc000449.1_g00018.1 52 EADCIYYLRTGFCGYGDRCRFNHPR 76 689********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.784	49	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	49	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.8E-11	52	76	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-8	52	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-7	55	76	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MERSSGTQAM EGTSVDPVAE WMAPGGETGL EEPMWQLTLG GGSESYPERP NEADCIYYLR 60 TGFCGYGDRC RFNHPRDRSL TVGAMRSSGG EYPERVGQPV CQVLKDFSFG C

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175056.1	9e-67	PREDICTED: zinc finger CCCH domain-containing protein 34-like
Swissprot	Q9SQU4	9e-34	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	A0A022RY54	3e-55	A0A022RY54_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.G00186.1.p	3e-55	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16834	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	4e-36	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]