PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000452.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 106aa    MW: 12391.4 Da    PI: 10.6295
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000452.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.21.9e-17886159
                 trihelix  1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnk 59
                             +Wt+++v++Li ++ +++++++++                     +kk++W++vs++m+ergf  sp+qC++k+++lnk
  Itr_sc000452.1_g00014.1  8 KWTDNMVRLLIMVVYYIGDEVGSEGnstnptagnkkkagasvgvlQKKGKWKSVSQAMMERGFYMSPQQCEDKFNDLNK 86
                             7**************9999988643366788888999999**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-15686No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MCSWQRMKWT DNMVRLLIMV VYYIGDEVGS EGNSTNPTAG NKKKAGASVG VLQKKGKWKS  60
VSQAMMERGF YMSPQQCEDK FNDLNKPRAR LSRIKPCWKH WIYRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788508.11e-42PREDICTED: ESF1 homolog
TrEMBLA0A1U7XCB63e-41A0A1U7XCB6_NICSY; ESF1 homolog
STRINGXP_009788508.15e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.15e-25