PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000454.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 254aa MW: 28110.7 Da PI: 8.4756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000454.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8e-13	62	108	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+l+P K++Ka+ L k++ Ik+L Itr_sc000454.1_g00006.1 62 RNHSEAERRRRERINGHLSTLRSLIPGT-----NKMDKAALLAKVISEIKEL 108 58***********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-14	55	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.713	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	62	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00104	62	109	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-14	63	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-12	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEFFNSFAGF STENYGIQRM IRNGSSSSSS LVLDTEKGEL VRALVRPGQK GVNPEKALIA 60 LRNHSEAERR RRERINGHLS TLRSLIPGTN KMDKAALLAK VISEIKELRG SASEATKGIL 120 VPTDTDEVRV EQQAEGCDGA SYSIKASLCC DYKHELLSEL RQALDALPLK TLRAEIATLG 180 SRMVSLFVVT ENEGNVEDTE RREFLASSVH QALRSVLDKF YASEEFSSRT SLSSKRRRVS 240 FLNSSGSSSL GDFW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	ERRRRE
2	234	238	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193659.1	1e-162	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1S4BS57	1e-129	A0A1S4BS57_TOBAC; transcription factor bHLH30-like
STRING	XP_009611307.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11989	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-31	bHLH family protein