PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000458.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 397aa    MW: 44055.8 Da    PI: 8.1182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000458.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-151462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+d + + G+g +W + +++ g++R++k+c++rw++yl
  Itr_sc000458.1_g00008.1 14 KGPWSPEEDAKLKDFIDKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding37.94.2e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc000458.1_g00008.1  69 GEFSEEEDRVICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.945962IPR017930Myb domain
SuperFamilySSF466892.3E-2612109IPR009057Homeodomain-like
SMARTSM007178.9E-111364IPR001005SANT/Myb domain
PfamPF002495.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-231569IPR009057Homeodomain-like
CDDcd001676.39E-81662No hitNo description
PROSITE profilePS5129422.16463117IPR017930Myb domain
SMARTSM007176.0E-1267115IPR001005SANT/Myb domain
PfamPF002495.4E-1169111IPR001005SANT/Myb domain
CDDcd001671.84E-870113No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGRAPCCDKS KVKKGPWSPE EDAKLKDFID KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRVIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSM  120
MLLPPSSSSS SSSSKHRSVI SSSMSPLFSA APTAPSVLLP TLPQQQQFSF YTPHRSFSGL  180
ESPASLHHPD FGPGYDHCNK SPYSSFNFQI NHQDHQAALL NPAALMQQYH HHQAGMNKGN  240
HNLLMFGGSE VSGSSSSDGS CSQISYERSK IADHNVKQEP AADHQLLGKY TFQGNPSPHH  300
HQIISSTNAG FQDDNNQIQG HTFFLDYGGL SNGATTAAAT TTQQLQYDLE VVRELVSSSS  360
SNGHGHDNHN NINNNNNDFL LFNYENKTDD QKGMYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199016.10.0PREDICTED: transcription factor RAX2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-73myb domain protein 36