PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000461.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 367aa    MW: 39754.1 Da    PI: 6.4283
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000461.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.3e-17253287135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Itr_sc000461.1_g00008.1 253 CLHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 287
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-7622343IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-14247297IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-13247284IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.413247283IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13249310No hitNo description
CDDcd002022.20E-12252299No hitNo description
PfamPF003207.8E-15253287IPR000679Zinc finger, GATA-type
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAARGLFIDG SYLLPAGEAE FSSESRYVLE GKAAMENNCN NFPVDDLLNF SVEDEVMADT  60
FFDSVTGDSS TVTGVDSCNS SISGGGGCNF NGNLGCRSFT DAAFPPPSEI CVPYEDLAEL  120
EWLSNIVEDS FSSDELQNLH LISATKTAST AAAASNITDT LSSVTNIAPT GRQSVTEEVS  180
PPAFRSDVSV PGKARSKRSR TAPCDWSSRL LHLSPATSSS DSNCSTAAAI PRAATKTAPC  240
KRRENSETPG RKCLHCASEK TPQWRTGPLG PKTLCNACGV RYKSGRLVAE YRPAASPTFE  300
STRHSNSHRK VLELRRQKDL RRQHHQLQQQ QQSLISQASI FGISNGAEDY LLHHHLESGC  360
PDFRHMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308322RKVLELRRQKDLRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196274.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A1S4A1G81e-140A0A1S4A1G8_TOBAC; GATA transcription factor
STRINGXP_009628152.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-62GATA transcription factor 9