PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000461.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 248aa    MW: 26358 Da    PI: 4.7716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000461.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1961111155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Itr_sc000461.1_g00011.1  61 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 111
                              68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1361111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3262120IPR001471AP2/ERF domain
SMARTSM003801.6E-3762125IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2162120IPR016177DNA-binding domain
PROSITE profilePS5103223.56562119IPR001471AP2/ERF domain
PRINTSPR003671.9E-106374IPR001471AP2/ERF domain
CDDcd000181.90E-3063121No hitNo description
PRINTSPR003671.9E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAEAETHSSE AESYANSSSS TSPNSSMQDS VLLGPSSGGV EVKTPAKWRG KRGRESGHRH  60
PVYRGVRMRS WGKWVSEIRE PRKKSRIWLG TYPTAEMAAR AHDVAALSIK GSSAILNFPH  120
LAASLPAPTS RSPRDVQAAA AKAAAMEDLN SSSSSHSSSS LSTSASSSEC ASAATLASDE  180
LGEIIELPPL EGSVDFLESN AELNVADVAA EGWVYPPWWA SDGEEFFGYF LDQEGVSLGD  240
CVFPESFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2153120573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979203e-36BT097920.1 Soybean clone JCVI-FLGm-11H10 unknown mRNA.
GenBankFJ2284533e-36FJ228453.1 Glycine max AP2 domain-containing transcription factor 1 (AP2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196657.11e-121PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G9HTV63e-71A0A2G9HTV6_9LAMI; Uncharacterized protein
TrEMBLA0A3Q7GXB52e-71A0A3Q7GXB5_SOLLC; Uncharacterized protein
STRINGSolyc06g066540.1.13e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]