PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000462.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 332aa MW: 36818.5 Da PI: 5.2308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000462.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171	3.8e-53	32	178	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvka.eekewyfFskrdkkyat 70 lppGfrFhPtdee++v+yLkkkv++ ++ +i evd++k+ePwdLp k ++kew+fF ++d+ky+t Itr_sc000462.1_g00010.1 32 LPPGFRFHPTDEEIIVDYLKKKVTDIAFSS-VAIGEVDLNKCEPWDLPIlmlmggdfeliagkaK--MmGKKEWFFFWQKDRKYPT 114 79***********************988.67***********55799999999888532..23778********** PP NAM 71 gkrknratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+r+nrat+sgyWkatgkdke++++ +g+ vg+kktLvfykgrapkg+kt+W+mheyrl Itr_sc000462.1_g00010.1 115 GTRTNRATESGYWKATGKDKEIFQSgrgsssSGSIVGMKKTLVFYKGRAPKGQKTNWIMHEYRL 178 ********************97776666666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-57	27	199	IPR003441	NAC domain
PROSITE profile	PS51005	56.236	32	199	IPR003441	NAC domain
Pfam	PF02365	8.5E-28	33	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
METVPETASF DPLVSHGGAD TGQAAEAAVV YLPPGFRFHP TDEEIIVDYL KKKVTDIAFS 60 SVAIGEVDLN KCEPWDLPIL MLMGGDFELI AGKAKMMGKK EWFFFWQKDR KYPTGTRTNR 120 ATESGYWKAT GKDKEIFQSG RGSSSSGSIV GMKKTLVFYK GRAPKGQKTN WIMHEYRLHG 180 TQFYNTTREE WVVCRVFHKQ TTGVVYMRRS PPRNDAVSRI DSISVADHLL PPLTDFPDYS 240 DDNPPAPPLL PCSLTLQNPP SALFYPPNPN SDTATAALKA ESVSQDAAGV VSPDVTPTEI 300 SWELPDGGGA LGGLYDDSMA DLDRYYSFLN YY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-50	32	203	20	172	NAC domain-containing protein 19
3swm_B	8e-50	32	203	20	172	NAC domain-containing protein 19
3swm_C	8e-50	32	203	20	172	NAC domain-containing protein 19
3swm_D	8e-50	32	203	20	172	NAC domain-containing protein 19
3swp_A	8e-50	32	203	20	172	NAC domain-containing protein 19
3swp_B	8e-50	32	203	20	172	NAC domain-containing protein 19
3swp_C	8e-50	32	203	20	172	NAC domain-containing protein 19
3swp_D	8e-50	32	203	20	172	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163005.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-79	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2Z5HVM5	0.0	A0A2Z5HVM5_IPOBA; NAC10 protein
STRING	A0A087G863	2e-79	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-80	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]