PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000473.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 279aa    MW: 30996.9 Da    PI: 9.7136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000473.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.7e-1862151299
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              +k +++s++ +  +l lpk+f+++h  +   +  ++l de+g+++e k+ +++++    l++GW++F  +++L +gD++vF+l++ 
  Itr_sc000473.1_g00009.1  62 VKFMLHSHTASGFWLGLPKDFCTSHLPN--HNAAIILVDENGKEMETKYLVERHG----LSGGWRGFSVDHNLIAGDVLVFQLIE- 140
                              68899********************533..4558***************666666....***********************985. PP

                              SEE..EEEEE-S CS
                       B3  88 sefelvvkvfrk 99 
                                f+l+v ++r+
  Itr_sc000473.1_g00009.1 141 -PFKLKVYIVRA 151
                              .9999**99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-2054152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-2354152IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2559150No hitNo description
SMARTSM010191.6E-2161152IPR003340B3 DNA binding domain
PROSITE profilePS5086313.08461152IPR003340B3 DNA binding domain
PfamPF023629.8E-1662151IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSLAANKKV IKRRSPTPKK VQAKGEGSNS RRDCDSVDEN SLPMRRAREL QANLSPQFPS  60
LVKFMLHSHT ASGFWLGLPK DFCTSHLPNH NAAIILVDEN GKEMETKYLV ERHGLSGGWR  120
GFSVDHNLIA GDVLVFQLIE PFKLKVYIVR ANDSTNIECA ISLLNLSHSA QPIANDYSIK  180
VMMISHNLAS SVVYLIQFQC AFCLELKAKV KDVSGHNHDR GCESDLPEAF FIPGLRLTLT  240
TVSVSVRPGV RKFFAMVTIA LRAMTLIGRS GIRCNSQWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199015.11e-112PREDICTED: B3 domain-containing protein Os03g0184500-like
TrEMBLA0A484N1134e-66A0A484N113_9ASTE; Uncharacterized protein
STRINGXP_009778966.14e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-39B3 family protein