PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000477.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25183.4 Da    PI: 8.0526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000477.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1880134256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++keq   Lee+F+ + +++  ++ eLA+kl+L  rqV vWFqNrRa+ k
  Itr_sc000477.1_g00008.1  80 RKKLRLNKEQSALLEECFKHHTTLTMGRKHELATKLNLRPRQVEVWFQNRRARTK 134
                              678899***********************************************98 PP
2HD-ZIP_I/II117.38.7e-3880170191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq++lLEe+F+++++L+  rK+ela++L+l+prqv+vWFqnrRARtk+kq+E+d++ Lk+ +++l+ en+rL++e +e
  Itr_sc000477.1_g00008.1  80 RKKLRLNKEQSALLEECFKHHTTLTMGRKHELATKLNLRPRQVEVWFQNRRARTKLKQTEVDCNLLKKYCESLSYENCRLKRELQE 165
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr++ 
  Itr_sc000477.1_g00008.1 166 LRSSF 170
                              *9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-1865135IPR009057Homeodomain-like
SuperFamilySSF466891.8E-1866137IPR009057Homeodomain-like
PROSITE profilePS5007116.24476136IPR001356Homeobox domain
SMARTSM003897.8E-1478140IPR001356Homeobox domain
CDDcd000863.99E-1480137No hitNo description
PfamPF000461.5E-1580134IPR001356Homeobox domain
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
SMARTSM003401.6E-12136180IPR003106Leucine zipper, homeobox-associated
PfamPF021833.5E-7136168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAEDDQKLDL RLGLGNCTMP KEDNNSPKKT SGFGVSLDLS FPSHSNDQSG DIIESSKTYE  60
IEGMESQNSY STKSHSGLMR KKLRLNKEQS ALLEECFKHH TTLTMGRKHE LATKLNLRPR  120
QVEVWFQNRR ARTKLKQTEV DCNLLKKYCE SLSYENCRLK RELQELRSSF KFDRPFSDQP  180
PKAKTTATCP SCEKTAGLSG AGSDQKDEAE LVDTVLELKT DP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158841.11e-127PREDICTED: homeobox-leucine zipper protein HOX19-like
SwissprotA2XE765e-41HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotA2YW037e-41HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotP466033e-41HAT9_ARATH; Homeobox-leucine zipper protein HAT9
SwissprotQ6YPD06e-41HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
SwissprotQ8GRL45e-41HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A328DAR42e-68A0A328DAR4_9ASTE; Uncharacterized protein
STRINGXP_009630679.16e-57(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-43HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]