PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000487.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 386aa    MW: 42470.1 Da    PI: 6.4077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000487.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12316361655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er+RR ri +++ +L+el Pk     +k  s a++L  Ave+Ik+Lq
  Itr_sc000487.1_g00026.1 316 SIAERNRRTRISERMKKLQELFPKM----DKQTSTADMLDWAVEHIKELQ 361
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.024310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14313374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-9314365No hitNo description
Gene3DG3DSA:4.10.280.102.4E-13315374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MFSSEAPISR ELTSGSNSSF LFPSANNNEL LKSKEVMGSD LYQNQSSGLM RYRSAPSSFF  60
AGVMDSAAAN FSAANDAAAA DSFMVNDGSS SSDSETMFSS ILNCGGSGSE SRDLKNSVQF  120
LKPEMAEESH KRSSEAQQMV FEAPEMGSYG VEMEMQAQMR QQQFRNPSNL IRQSSSPAGF  180
FSGFDVMREG GNYNKGSDGA NRAASLSSNG FNNHINYSSA QSSSSNYMPS IAENESWNDS  240
SFNCLKRSRD GDFKILSALN GMEDQSGGEP RNCTPGLTHH LSLPSSVEIE KYLHFQQDAV  300
PCKIRAKRGC ATHPRSIAER NRRTRISERM KKLQELFPKM DKQTSTADML DWAVEHIKEL  360
QKQVEILTDK KAKCTCSSEA QKVGMQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157249.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A0V0I8571e-122A0A0V0I857_SOLCH; Putative transcription factor bHLH-like
TrEMBLM1CDA41e-122M1CDA4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000650291e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-54bHLH family protein