PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000491.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 196aa    MW: 21972.1 Da    PI: 4.3425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000491.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-181261255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +ykGVr +k +g+Wv+eIr p++   r r++lg++ tae+Aa+a + a  +l+g
  Itr_sc000491.1_g00012.1 12 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYNTAEKAARAFDVAQFCLRG 61
                             8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-301271No hitNo description
PROSITE profilePS5103222.4181269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-301270IPR001471AP2/ERF domain
PfamPF008472.0E-111261IPR001471AP2/ERF domain
SMARTSM003802.0E-341275IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-211270IPR016177DNA-binding domain
PRINTSPR003678.4E-101324IPR001471AP2/ERF domain
PRINTSPR003678.4E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MERNEESPSA VKYKGVRKRK WGKWVSEIRL PNSRERIWLG SYNTAEKAAR AFDVAQFCLR  60
GPTAQLNFPD DPPDVPGWQT FTPPEIQDVA AQYGSDYSRP PPAVGRQEQG NHEEITHVMD  120
LNDTSPSSTS EGAVQMGDID WSFFDALDGA PTCNDFGLFS GDDLYVPPQP QPPPPPSTTD  180
HDNETQFSHP SFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1612711474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167895.11e-116PREDICTED: ethylene-responsive transcription factor ERF018-like
TrEMBLA0A4D8Z4X14e-59A0A4D8Z4X1_SALSN; EREBP-like factor
STRINGPOPTR_0006s23480.14e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-47ERF family protein