PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000492.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 191aa    MW: 20485.6 Da    PI: 6.6793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000492.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-183078355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeA +a++a +++++g
  Itr_sc000492.1_g00017.1 30 FRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEATRAYDATARQFWG 78
                             8*******.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-292886No hitNo description
Gene3DG3DSA:3.30.730.102.3E-302986IPR001471AP2/ERF domain
SMARTSM003801.5E-352992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6292986IPR001471AP2/ERF domain
PRINTSPR003671.7E-103041IPR001471AP2/ERF domain
PfamPF008471.5E-123078IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213087IPR016177DNA-binding domain
PRINTSPR003671.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNDGSGFDTS VVESTGSLQC NRGSDYTANF RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD  60
TAEEATRAYD ATARQFWGPK AKTNFPLPSE NHNPSRSSTV ESSESEGSPH APRELDLTRR  120
LGVGEVGSVN HGLSFALTGV PVPVLPKCAA PVRAAHSDSD SSSVVDESHF DAGLAKKGLN  180
LDLNLAPPME S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-182987564ATERF1
3gcc_A3e-182987564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194110.12e-61PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404771e-47ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE22e-50A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGXP_009772525.11e-45(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-34erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]