PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000496.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 323aa    MW: 34280.3 Da    PI: 9.0387
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000496.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.33.8e-3972131362
                   zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Itr_sc000496.1_g00013.1  72 EAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 131
                              6789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3455124IPR003851Zinc finger, Dof-type
PfamPF027016.9E-3374129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60975129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWPNQHG DGVDGSESSA LLSAALVAQG QPQPQPPAAA GGGIRPGSMT  60
ERARMAKIPI PEAALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV  120
GGGCRRNKRS KGSRSKSPAR AAADAPSSSS NNAHRHADIL SAPSHHLPPP PPQIPFLPPL  180
TGFAPPDLGL NFGANEMEFP AGNNSGSGGI NLSARFADLF RLQQGITQLP FLSGLDHPAG  240
GMFQFETGID QYVAAGATDH LGAKPFETGG NLVNVKLEEH NNNNALNLSR NFLGMSGNDQ  300
FWSGNNGFAA DLSGYASSTG RLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150881.11e-170PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A484N0Z36e-87A0A484N0Z3_9ASTE; Uncharacterized protein
TrEMBLA5BZE75e-87A5BZE7_VITVI; Uncharacterized protein
STRINGXP_006486095.12e-84(Citrus sinensis)
STRINGXP_006436002.12e-84(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.18e-44DNA binding with one finger 2.4