PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000497.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 93aa MW: 10141.1 Da PI: 5.9475

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000497.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.6	8.6e-14	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e Itr_sc000497.1_g00002.1 1 MVYEANARMRDPVYGCVGAISSLQQQVDALQTQLAITQAE 40 69*********************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.193	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-11	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MVYEANARMR DPVYGCVGAI SSLQQQVDAL QTQLAITQAE AVHMRMRHPF SSSSYSPENA 60 SPSSSRHAHT THGGDPFGTD MAVDQNNVGD SFW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157784.1	2e-54	PREDICTED: LOB domain-containing protein 4-like
TrEMBL	A0A2J6LSR3	3e-33	A0A2J6LSR3_LACSA; Uncharacterized protein
TrEMBL	A0A314LC49	2e-33	A0A314LC49_NICAT; Lob domain-containing protein 4
STRING	XP_009603165.1	4e-34	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	8e-20	ASYMMETRIC LEAVES 2-like 9