PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000497.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 63aa MW: 6953.12 Da PI: 10.2346

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000497.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	73	5.8e-23	15	61	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+CakdCv+apyfpa++p+kfa vhk+FGasnv kll+ Itr_sc000497.1_g00003.1 15 PCAACKLLRRRCAKDCVFAPYFPADEPHKFASVHKVFGASNVNKLLQ 61 7*******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.069	14	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-22	15	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MKESWRKQGG SAASPCAACK LLRRRCAKDC VFAPYFPADE PHKFASVHKV FGASNVNKLL 60 QVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	11	61	7	57	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	11	61	7	57	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157784.1	2e-37	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	3e-31	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	M1AGH3	4e-32	M1AGH3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400022286	6e-33	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-33	LOB domain-containing protein 4