PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000497.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 231aa    MW: 25366.2 Da    PI: 6.0378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000497.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12167212655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+L+
  Itr_sc000497.1_g00006.1 167 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLE 212
                              689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.37E-13165216No hitNo description
Gene3DG3DSA:4.10.280.108.6E-16166222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9167212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFEQFTEYGA MRGMGSYGAG SNANADASFS SPSRFKNHTG FSSSGQPASS SGAMASISEI  60
GEEGVKEETS PGHGRFSETQ KNDEFSMPSW EDSDILSDLF LNVSEEKPFS NSNVSDIQKS  120
EDQCRPPGLL SHHLSLPKIP TQLSAIMQDS VPCKVRAKRG CATHPRSIAE RVRRTKISER  180
MRKLQELVPN MDKQTNTADM LDLAVDYIKD LESQVQVLSE NRAKCTCSSS K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157886.11e-151PREDICTED: transcription factor bHLH130-like isoform X1
RefseqXP_019157888.11e-151PREDICTED: transcription factor bHLH130-like isoform X1
RefseqXP_019157889.11e-151PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A3Q7JF473e-94A0A3Q7JF47_SOLLC; Uncharacterized protein
STRINGSolyc12g100140.1.12e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-47bHLH family protein