PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000499.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 396aa    MW: 44511.6 Da    PI: 6.7707
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000499.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093243582155
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Itr_sc000499.1_g00002.1 324 KWPYPSETEKVALAEATGLDQKQINNWFINQRKRH 358
                              669*****************************885 PP
2ELK35.91.6e-12278299122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK++Ll+KYsgyL+sLkqE+s
  Itr_sc000499.1_g00002.1 278 ELKNHLLKKYSGYLSSLKQELS 299
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-22120164IPR005540KNOX1
PfamPF037903.6E-23121163IPR005540KNOX1
SMARTSM012563.8E-27172223IPR005541KNOX2
PfamPF037916.1E-23177221IPR005541KNOX2
PROSITE profilePS5121311.243278298IPR005539ELK domain
SMARTSM011881.0E-6278299IPR005539ELK domain
PfamPF037897.9E-10278299IPR005539ELK domain
PROSITE profilePS5007112.811298361IPR001356Homeobox domain
SuperFamilySSF466892.05E-19299372IPR009057Homeodomain-like
SMARTSM003891.5E-12300365IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-27303364IPR009057Homeodomain-like
CDDcd000863.93E-12310362No hitNo description
PfamPF059201.7E-16318357IPR008422Homeobox KN domain
PROSITE patternPS000270336359IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MENYGQLGEE TAAAAARQRG SGTGFMYGSS VLGPPSYGRT GGESNHVATG FHLQPGGGGE  60
CYGQSDGPPH TTVKSEGGGS SASHHHHHHH QMFQYPLMIR DHLHPRQQES AGDNSLSEGD  120
AMKAKIIAHP QYSNLLEAYV DCQKVGAPPE MAARLSAARQ ELEGKQRASF IGSRDSSKDP  180
ELDQFMEAYY DMLMKYRDEL TRPFQEAMEF MRRIESQLNM LSDGPVRIFN SGGVKGSNAR  240
EHLVDDKCEG VGSSEEDQDN SGGETELREI DPRVQDRELK NHLLKKYSGY LSSLKQELSK  300
KKKKGKLPKD ARQKLLSWWE LHYKWPYPSE TEKVALAEAT GLDQKQINNW FINQRKRHWK  360
PSEDMQFMVM DGLHHQNAAL YMDGHYMGDA PYRLGP
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2830280.0AB283028.1 Ipomoea batatas Ibkn2 mRNA for class-I knotted1-like homeobox protein IBKN2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174076.10.0PREDICTED: homeotic protein knotted-1-like
SwissprotQ413301e-166KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA8QXP60.0A8QXP6_IPOBA; Class-I knotted1-like homeobox protein IBKN2
STRINGEOY156241e-180(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-129KNOTTED-like from Arabidopsis thaliana