PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000501.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 245aa    MW: 27476.6 Da    PI: 7.5807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000501.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191259148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+ll d+v ++G g+W+++ar+ g++R +k+c++rw +yl
  Itr_sc000501.1_g00011.1 12 KGPWTPEEDKLLGDYVSLHGEGRWSSVARCAGLNRNGKSCRLRWVNYL 59
                             79********************************************97 PP
2Myb_DNA-binding50.16.3e-1665109147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  +++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Itr_sc000501.1_g00011.1  65 RGHISPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109
                              67779*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.221763IPR017930Myb domain
SuperFamilySSF466892.58E-319106IPR009057Homeodomain-like
SMARTSM007173.0E-151161IPR001005SANT/Myb domain
PfamPF002494.3E-171259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231366IPR009057Homeodomain-like
CDDcd001676.30E-121459No hitNo description
PROSITE profilePS5129419.15864114IPR017930Myb domain
SMARTSM007174.7E-1464112IPR001005SANT/Myb domain
PfamPF002497.2E-1465109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2467113IPR009057Homeodomain-like
CDDcd001673.22E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVGAAEKAGW RKGPWTPEED KLLGDYVSLH GEGRWSSVAR CAGLNRNGKS CRLRWVNYLR  60
PGLKRGHISP QEEGIIIELH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKPAAGKTS  120
EKQDRRKNRR KRNEEKVIND TKPQETMSNN DSSCITAAAA PMGDNNQLGG TSANTTTTSY  180
HEDIESWVDS FAMDMDGLWG GGLWNLDDDD SYPEAALLEQ GHVIQNPCGF GADHAVNLWN  240
GGFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23121137107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110131KKKPAAGKTSEKQDRRKNRRKR
2111126KKPAAGKTSEKQDRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176345.11e-140PREDICTED: myb-related protein 340-like
TrEMBLA0A2G3D9078e-87A0A2G3D907_CAPCH; Transcription factor MYB59
STRINGXP_009610111.11e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-68myb domain protein 121